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Genetic Analysis Software Database Save
Extensive, regularly-updated directory of linkage, mapping, and pedigree statistics software with links to obtain freely available copies.
http://www.nslij-genetics.org/soft/   

Genetics, Wageningen Save
Provides programmes in the area of animal breeding including SIP (Selection Index Program), MAGGIC (Gibbs Sampling) and GENEFLOW. Free software for WIN.
http://www.zod.wau.nl/abg/hs/links/so...   

ASReml Cookbook Save
Statistical software designed for fitting mixed models for large datasets. Contains commented code for univariate and multivariate analysis including longitudinal and spatial analysis.
http://uncronopio.org/ASReml   

Big Bench Software Save
Commercial software for the management of transgenic mouse colonies. Windows and Mac OS X. Demo version available.
http://www.bigbenchsoftware.com/   

CircuSoft Instrumentation LLC Save
Transgenic mouse colony tracking and management software for the Mac and Windows. Includes demo software and manuals.
http://www.circusoft.com/content/prod...   

DESIRE Save
Explore possible selection outcomes when goals (desired gains) are set for traits. This free WIN program is also contained in GENUP.
http://www-personal.une.edu.au/~bking...   

DFREML Save
Meyer's variance component estimation software for animal breeding is free for research purposes, available for UNIX, DOS and FORTRAN source code.
http://agbu.une.edu.au/~kmeyer/dfreml...   

DRIFT Save
Graphically represents the effect of genetic drift on gene frequency of one or more populations for a single locus, two allele model in a closed population using stochastic simulation methods. The DOS program is free.
http://nitro.biosci.arizona.edu/zbook...   

Finnish Forest Genetics and Tree Breeding Save
Links to population and quantitative genetic software of interest in tree improvement, but also useful in other species.
http://www.metla.fi/info/vlib/forestg...   

GeneFlow Inc Save
This Virginia, USA company provides software (GeneFlow, SynerGene, QTLlocate) and services oriented towards plant breeding. Website does not give prices or operating systems supported.
http://www.geneflowinc.com/   

GeneticStudio Save
A complete suite of population genetic analysis programs for Mac. Includes plug-in modules. Not updated since 2001.
http://www.umsl.edu/~biology/Dyer/Gen...   

Genup Save
Free software to assist learning quantitative genetic concepts (animal breeding) for WIN.
http://www-personal.une.edu.au/~bking...   

Ignacy Misztal Save
Animal breeding oriented programs for sparse matrix multiple trait REML and BLUP. Fortran source is free for research use.
http://nce.ads.uga.edu/~ignacy/progra...   

LAMS Save
Freeware record keeping system designed for a breeding colony of transgenic mice. Includes program description, system requirements, and installation instructions.
http://www.hgu.mrc.ac.uk/Softdata/Lams/   

Laboratory of Plant Breeding, Wageningen Save
Offers free downloadable genetics and plant breeding related software.
http://www.dpw.wau.nl/pv/   

Locus Technology, Inc Save
Colony management, supports creation and tracking of research animals and for transgenic and congenic lines, knockouts and outbred strains.
http://www.locustechnology.com/   

MapPop Save
Software for selective mapping and bin mapping. Windows version, documentation and references are available for download.
http://www.bio.unc.edu/faculty/vision...   

PIGBLUP and BREEDPLAN Save
Animal Genetics and Breeding Unit of University of New England, Australia have developed BLUP software for genetic selection of swine and beef cattle. Little information is on this site, so ABRI would have to be contacted.
http://abri.une.edu.au   

Pedigree Viewer Save
Unique display and examination tool for large pedigrees, with inbreeding and genetic merit data also. Free WIN program.
http://www-personal.une.edu.au/~bking...   

PopGen Save
Software that models population genetics with emphasis on genetic drift, selection, and migration. Windows 95.
http://cc.oulu.fi/~jaspi/popgen/popge...   

PowerMarker Save
Set of statistical methods for discrete genetic data analysis, designed especially for microsatellite data analysis. Includes downloadable versions for Windows.
http://statgen.ncsu.edu/powermarker/   

Progeny Software Save
Supply pedigree drawing and genetic data management software for genetic research with a built-in customizable relational database.
http://www.progenygenetics.com   

Quantitative Genetics Resources Save
List of resources with links to programs and notes on a range of subjects including animal and plant breeding, and evolutionary and human genetics.
http://nitro.biosci.arizona.edu/zbook...   

R/qtl: A QTL Mapping Environment Save
Program for mapping quantitative trait loci in experimental crosses. Includes sample graphics and tutorial in pdf format.
http://www.rqtl.org   

Statistical Genetics Software Save
Collection of primarily Fortan 77 programs for genetic analysis. Requires registration to download. Site not updated since 1999.
http://www.biomath.medsch.ucla.edu/fa...   

Taxonomy 3 Save
A package of SAS macros for target discovery, detection of subphenotype and genetic heterogeneity. Can use an unlimited numbers of markers in a single multivariate analysis.
http://taxonomy.delrieu.org   

The CompuPed 4.0 Pedigree Program Save
Extended and reverse pedigrees, inbreeding coefficients and genetic inheritance capabilities for Win and Mac. Download a demo or order online.
http://www.mbfs.com/compuped/   

VCE Save
Groeneveld's Variance Component Estimation software was developed for animal breeding problems. WIN and UNIX versions are free for research use. PEST documentation is also available here.
http://www.tzv.fal.de/~eg/   

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